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Many of our undergraduates have co-written articles with our faculty. Below is a recent sample. Undergraduate students are in bold.
Submitted by: Elena Dormidontova, Assistant Professor, Macromolecular Science and Engineering
M. Hagy, C.-C. Chen, E.E. Dormidontova. The Effect of Orientational Specificity of Complexation on the Behavior of Supramolecular Polymers: Theory and Simulation. Macromolecules; 40: 3408-3421, 2007
Submitted by: Michael S. Branicky, Associate Professor, Computer Science
Michael S. Branicky, Michael M. Curtiss, Joshua Levine, and Stuart Morgan. RRTs for Nonlinear, Discrete, and Hybrid Planning and Control. Proc. IEEE Conf. on Decision and Control, Maui, December 9-12, 2003. To appear.
Michael S. Branicky, Michael M. Curtiss, Joshua Levine, and Stuart Morgan. Sampling-based planning and control. Proc. Twelfth Yale Workshop on Adaptive and Learning Systems, New Haven, CT, May 28-30, 2003.
Submitted by: Henri Brunengraber, Professor, Nutrition
Okere IC, McElfresh TA, Brunengraber DZ, Martini W, Sterk J, Huang H, Chandler MP, Brunengraber H and Stanley WC. Differential effects of heptanoate and hexanoate on myocardial citric acid cycle intermediates following ischemia reperfusion. J Appl Physiol; 1: 76-82, 2006.
Yang L, Kasumov T, Zu S-H, David F, Brunengraber H. Metabolic study of the labeling of liver gluconeogenesis and the citric acid cycle with NaH13CO3 and [1,4-13C2]succinate. J. Biol. Chem. (submitted 9/2006)
Submitted by: Steven Eppell, Associate Professor of Biomedical Engineering
B.A. Todd, J. Rammohan, S.J. Eppel, (2003). Connecting Nanoscale Molecular Images of Proteins with Their Genetic Sequences. Biophysical Journal, 84, no. 6, 3982-3991.
Submitted by: Thomas Gerken, Professor of Biochemistry in Pediatrics
Gerken, T.A., Tep, C., & Rarick, J., Role of peptide sequence and neighboring residue
glycosylation on the substrate specificity of the uridine 5'-diphosphate- -N-acetylgalactosamine:polypeptide N-acetylgalactosaminyltransferases T1 and T2: Kinetic modeling of the porcine and canine submaxillary gland mucin tandem repeats, Biochemistry 43, 9888-9900, 2004.
Submitted by: John Lewandowski, Professor of Materials Science and Engineering
Lee, K & Lewandowski, J.J. Effects of Microstructual Characteristics on Mechanical Properties of Open-Cell Nickel foams. Materials Science and Technology, 2005, 21 (N.11), 1355-1358. This publication was a result of Katy's senior thesis.
Submitted by: Roger Marchant, Professor of Biomedical Engineering
Sagnella SM, King J, Kligman F, Murugesan G, Marchant RE, Kottke-Marchant K. "Human microvascular endothelial cell migration on biomimetic surfactant polymers." Biomaterials 25, 1249-1259 (2003).
Sagnella SM, Anderson EH, Sanabria N, Marchant RE, Kottke-Marchant K, Human endothelial cell interaction with surfactant polymers containing peptide ligands from the heparin binding domain of fibronectin. Tissue Engineering, 11, 226-236 (2005).
Zhu J, Gosen C, Marchant RE, Synthesis and characterization of poly(vinyl amine)-based amphiphilic comb-like dextran glycopolymers by a two-step method, J. Polym Sci, Polym Chem., 44, 192-199 (2006).
Zhu J, Beamish JA, Tang D, Kottke-Marchant K, Marchant RE. Extracellular matrix-like cell-adhesive hydrogels from RGD-containing poly(ethylene glycol) diacrylate, Macromolecules, 39, 1305-1308 (2006).
Sen Gupta A, Link E, Wang S, Anderson EH, Hoffman C, Kottke-Marchant K, Marchant RE, Platelet adhesion studies on dextran-modified poly(vinyl amine) surfactant polymer coated onto medical grade polycarbonate, Biomaterials 27, 3084-3095 (2006).
Submitted by: Stephen Previs, Assistant Professor of Nutrition
Brunengraber DZ, McCabe BJ, Kasumov T, Alexander JC, Chandramouli V and Previs SF. Influence of diet on modeling of adipose tissue triglycerides during growth. Am J Physiol Endo Metab 285: E917-925, 2003.
Loukili O, Rachdaoui B and Previs SF. Using isotope fractionation and chromatographic resolution to amplify the detection of 2H-labeling using gas chromatography-mass spectrometry: Theory, application and software development. Submitted, Analytical Biochemistry.
Millward CA, Heaney J, Sinasac D, Chu EC, Bederman I, Dufner D, Previs SF and Croniger CM. Mice with a deletion in the gene for CCAAT/Enhancer-binding protein ? are protected against diet-induced obesity. Submitted, Diabetes.
Mason KL, Bederman IR, Gilge DA, Combs WB and Previs SF. Measuring rates of biochemical flux in mice following a modified glucose tolerance test. Abstract presented at Experimental Biology, 2006. Included in “Undergraduate Student Poster Competition”
Submitted by: John Protasiewicz, Professor of Chemistry
Smith, R. C.; Earl, M. J.; Protasiewicz, J. D., "Synthesis and photoluminescent properties of a series of pnictogen-centered chromophores" Inorg. Chem. Acta. 2004, 357, 4139-4143.
Smith, R. C.; Bodner, C. R.; Earl, M. J.; Sears, N. C.; Hill, N. E.; Bishop, L. M.; Sizemore, N.; Hehemann, D. T.; Bohn, J. J.; Protasiewicz, J. D., "Suzuki and Heck coupling reactions mediated by palladium complexes bearing trans-spanning diphosphines" J. Organomet. Chem. 2005, 690, 477-481.
Submitted by: Roy Ritzmann, Professor of Biology
Ritzmann, R.E.. A.J. Pollack, J. Archinal, A.L. Ridgel, and R.D. Quinn, (2005) Descending Control of Body Attitude in the Cockroach, Blaberus discoidalis and Its Role in Incline Climbing. J. Comp. Physiol. A. 191:253-264.
Daltorio, K.A, Funt, J.M., Horchler, A.D. Gorb, S.M., Ritzmann, R.E, Quinn, R.D., (2005) Insect-inspired attachment mechanisms enable a small robot to climb glass walls. Soc. Neuroci. Abstr. CD ROM 31: 176.7
Submitted by: Lawrence Sayre, Professor of Chemistry
“Alzheimer-specific epitopes of tau represent lipid peroxidation induced conformations”, Q Liu, MA Smith, J Avilá, J Debernardis, M Kansal, A Takeda, X Zhu, A Nunomura, K Honda, PI Moreira, CR Oliveira, MS Santos, S Shimohama, G Aliev, J de la Torre, HA Ghanbari, SL Siedlak, PLR Harris, LM Sayre, and G Perry, Free Radical Biol. Med., 38, 746-754 (2005).
Submitted by: Menachem Shoham, Associate Professor of Biochemistry and Oncology
N.V. Adikesavan, S.S. Mahmood, S. Nithianantham, Z. Xu, N. Wu , M. Thibonnier and M. Shoham. A C-terminal segment of the V1R vasopressin receptor is unstructured in the crystal structure of its chimera with the maltose-binding protein. Acta Crystallogr. Section F 61:341-345 (2005).
R. Macion-Dazard, N. Callahan, Z. Xu, N. Wu, M. Thibonnier and M. Shoham. Mapping the binding site of six nonpeptide antagonists to the human V2-renal vasopressin receptor. J. Pharmacol. Exp. Ther 316:564-571 (2006).
Submitted by: Christoph Weder, Associate Professor, Macromolecular Science and Engineering
Kokil, A.; Huber, C.; Shiyanovskaya, I.; Caseri, W.R.; Singer, K.D.; Weder, C.; Synthesis And Properties Of Conjugated Polymer Networks Formed By Non-Covalent Interactions; Polymer Preprints (American Chemical Society, Division of Polymer Chemistry) 2003, 44(1), 665-666.
Kokil, A.; Yao, P.; Weder, C.; 2,2'-Bipyridine-Containing Poly(p-phenylene ethynylenes) - Synthesis, Characterization, and Complexation with Transition Metals; Macromolecules 2005, 38, 3800-3807.
Kokil, A.; Yao, P.; Kinami, M.; Wilger, D.; Rademaker, C.; Weder, C.; Synthesis, Processing and Properties of Conjugated Polymer Networks; Polym. Mater. Sci. Eng. Prepr. 2005, 92, 226-227.
Crenshaw, B.; Smith, K.; Weder, C.; Phase Separation of Excimer-Forming Fluorescent Dyes and Amorphous Polymers: A Versatile Mechanism for Sensor Applications; Polymer Preprints (American Chemical Society, Division of Polymer Chemistry) 2005, 46(1), 532-533.
Crenshaw, B.; Burnworth, M.; Kunzelman, J.; Mendez, J.; Smith, K.; Weder, C.; Creating Polymer Chameleons – Smart Blends with Self-Assessing Capabilities; Polymer Preprints (American Chemical Society, Division of Polymer Chemistry) 2005, 46(1), 506-507.
Crenshaw, B.; Christenson, S.; Burnworth, M.; Simha, R.; Weder, C.; Mechanistic Aspects of the Deformation-Induced Color Change of Photoluminescent Polymer Nanocomposites; Macromolecules In preparation.
Submitted by: David Wilson, Professor of Biomedical Engineering
D.L. Wilson, M.S. Breen, T. Lancaster, R. Lazebnik, S.G. Nour, and J.S. Lewin. Three Dimensional Method for Comparing in vivo Interventional MR Images of Thermally Ablated Tissue with Tissue Response. JMRI, Vol. 18, No. 4, 2003 (Jul): 90-102.
Dr. Wilson has published with this student numerous time. Many of them were published during the student's Ph.D. studies.
Presentations
Many of our students have presented their research at local, regional, national and international conferences. Some obtain travel funding through SOURCE to attend these.
Matthew Hagy (Polymer Science and Engineering major) presented on Simulation of Orientational Specificity in Hydrogen Bonding Supramolecular Polymers at the ACS Cleveland Meeting-in-Miniature, Notre Dame College, March 7, 2007. He conducted research with Prof. Elena Dormidontova in the Macromolecular Science and Engineering Department. Matthew also worked with Chun-Chung Chen who was a post-doc in Dr. Dormidontova's lab. Matthew has been the recipient of SOURCE Summer Research funding in the past.
Matthew Hagy also presented Simulation of Reversibly Associated Polymers with Orientational Specificity at ACS National, 223rd National Meeting and Exposition, Chicago, IL, March 25, 2007. This research was also conducted in Prof. Dormidontova's lab along with Chun-Chung Chen.
SOURCE offers travel awards for students to travel to conferences to present their research. Here is a list of travel award recipients during the 2006/2007 school year: Annual Summary of Travel Awards (pdf)
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